YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|28373918, gi\|...
Organism:	Homo sapiens
Length:	81 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28373918, gi|....

Description	E-value	Query Range	Subject Range
gi\|57209714 - gi\|57209714\|emb\|CAI40836.1\| prosaposin [Homo sapiens]	113.0	[0..2]	[81..194]
gi\|109089392 - gi\|109089392\|ref\|XP_001107170.1\| PREDICTED: similar to prosaposin isoform 8 [Macaca mulatta]	113.0	[0..2]	[81..194]
SAP_BOVIN - Prosaposin OS=Bos taurus GN=PSAP PE=1 SV=3	113.0	[0..2]	[81..195]
SAP_RAT - Prosaposin OS=Rattus norvegicus GN=Psap PE=1 SV=1	112.0	[0..2]	[81..193]
gi\|9438805 - gi\|9438805\|gb\|AAB36042.2\| sulfated glycoprotein-1; SGP-1; prosaposin [Rattus sp.]	112.0	[0..2]	[81..193]
gi\|60653889, gi\|... - gi\|60653889\|gb\|AAX29637.1\| prosaposin [synthetic construct], gi\|60653887\|gb\|AAX29636.1\| prosaposin [...	112.0	[0..2]	[81..194]

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Predicted Domain #1

Region A:
Residues: [1-81]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGDVCQDCI QMVTDIQTAV RTNSTFVQAL VEHVKEECDR LGPGMADICK NYISQYSEIA  60
   61 IQMMMHMQPK EICALVGFCD E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.09691
Match:	1n69A
Description:	Saposin B
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits