YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|158280948, gi...
Organism:	Chlamydomonas reinhardtii
Length:	365 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|158280948, gi....

Description	E-value	Query Range	Subject Range
gi\|82469923 - gi\|82469923\|gb\|ABB77212.1\| coproporphyrinogen III oxidase [Zea mays]	533.0	[0..4]	[365..58]
gi\|116284175, gi... - gi\|116812896\|ref\|NP_001035183.2\| coproporphyrinogen oxidase [Danio rerio], gi\|116284175\|gb\|AAI24460....	528.0	[0..16]	[365..101]
gi\|85078890 - gi\|85078890\|ref\|XP_956249.1\| hypothetical protein [Neurospora crassa OR74A] gi\|32415011, gi\|... - gi\|32415011\|ref\|XP_327985.1\| hypothetical protein [Neurospora crassa], gi\|28917304\|gb\|EAA27013.1\| hy...	526.0	[0..2]	[364..29]
CPOX - coproporphyrinogen oxidase	524.0	[0..15]	[365..92]
gi\|114588132 - gi\|114588132\|ref\|XP_516615.2\| PREDICTED: coproporphyrinogen oxidase isoform 2 [Pan troglodytes]	523.0	[0..15]	[365..92]
gi\|46138449, gi\|... - gi\|46138449\|ref\|XP_390915.1\| hypothetical protein FG10739.1 [Gibberella zeae PH-1], gi\|42552153\|gb\|E...	522.0	[0..3]	[365..33]

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Predicted Domain #1

Region A:
Residues: [1-365]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALQASTRSL QQRRAFSSAQ TSKRVSVTKV RATAIEAENY VKQAPQSLVR PGIDTEDSMR  60
   61 ARFEKVIRNA QDSICNAISE IDGKPFHQDA WTRPGGGGGI SRVLQDGNVW EKAGVNVSVV 120
  121 YGTMPPEAYR AATGNAEKLK NKGDGGRVPF FAAGISSVMH PRNPHCPTMH FNYRYFETEE 180
  181 WNGIPGQWWF GGGTDITPSY VVPEDMKHFH GTYKAVCDRH DPAYYEKFRT WCDEYFLIKH 240
  241 RGERRGLGGI FFDDLNDRNP EDILKFSTDA VNNVVEAYCP IIKKHMNDPY TPEEKEWQQI 300
  301 RRGRYVEFNL VYDRGTTFGL KTGGRIESIL MSMPQTASWL YDHQPKAGSP EAELLDACRN 360
  361 PRVWV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	147.0
Match:	2aexA
Description:	The 1.58A Crystal Structure of Human Coproporphyrinogen Oxidase Reveals the Structural Basis of Hereditary Coproporphyria
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits