| Protein: | SPCH_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 364 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCH_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
149.0 | [0..90] | [364..78] |
|
|
131.0 | [0..98] | [364..91] |
|
|
125.0 | [0..56] | [335..17] |
|
|
124.0 | [0..6] | [347..9] |
|
|
124.0 | [0..7] | [239..1] |
|
|
124.0 | [0..1] | [304..116] |
|
|
124.0 | [0..7] | [239..1] |
|
Region A: Residues: [1-89] |
1 11 21 31 41 51
| | | | | |
1 MQEIIPDFLE ECEFVDTSLA GDDLFAILES LEGAGEISPT AASTPKDGTT SSKELVKDQD 60
61 YENSSPKRKK QRLETRKEED EEEEDGDGE
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [90-171] |
1 11 21 31 41 51
| | | | | |
1 AEEDNKQDGQ QKMSHVTVER NRRKQMNEHL TVLRSLMPCF YVKRGDQASI IGGVVEYISE 60
61 LQQVLQSLEA KKQRKTYAEV LS
|
| Detection Method: | |
| Confidence: | 17.69897 |
| Match: | 1am9A |
| Description: | SREBP-1a |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [172-364] |
1 11 21 31 41 51
| | | | | |
1 PRVVPSPRPS PPVLSPRKPP LSPRINHHQI HHHLLLPPIS PRTPQPTSPY RAIPPQLPLI 60
61 PQPPLRSYSS LASCSSLGDP PPYSPASSSS SPSVSSNHES SVINELVANS KSALADVEVK 120
121 FSGANVLLKT VSHKIPGQVM KIIAALEDLA LEILQVNINT VDETMLNSFT IKIGIECQLS 180
181 AEELAQQIQQ TFC
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
