YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|158429249, gi...
Organism:	Homo sapiens
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|158429249, gi....

Description	E-value	Query Range	Subject Range
gi\|50754667 - gi\|50754667\|ref\|XP_414464.1\| PREDICTED: similar to cadherin-related neuronal receptor c02 [Gallus ga...	136.0	[0..2]	[104..2098]
gi\|28972738 - gi\|28972738\|dbj\|BAC65785.1\| mKIAA1400 protein [Mus musculus]	134.0	[0..2]	[104..306]
gi\|7243181 - gi\|7243181\|dbj\|BAA92638.1\| KIAA1400 protein [Homo sapiens]	133.0	[0..2]	[104..301]
gi\|76631688 - gi\|76631688\|ref\|XP_610378.2\| PREDICTED: similar to protocadherin 10 isoform 1 precursor isoform 1 [B...	133.0	[0..2]	[104..248]
gi\|114596047 - gi\|114596047\|ref\|XP_001134819.1\| PREDICTED: protocadherin 10 isoform 1 [Pan troglodytes]	132.0	[0..2]	[104..234]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GPLGSWVIPP ISCPENEKGP FPKNLVQIKS NKDKEGKVFY SITGQGADTP PVGVFIIERE  60
   61 TGWLKVTEPL DRERIATYTL FSHAVSSNGN AVEDPMEILI TVTDQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.522879
Match:	1o6sB
Description:	E-cadherin (epithelial)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits