YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27574030, gi\|...
Organism:	Escherichia coli
Length:	138 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27574030, gi|....

Description	E-value	Query Range	Subject Range
gi\|26109828, gi\|... - gi\|26250989\|ref\|NP_757029.1\| PapE protein [Escherichia coli CFT073], gi\|26249420\|ref\|NP_755460.1\| Pa...	167.0	[0..1]	[138..42]
gi\|78741, gi\|147094 - pir\|\|B27743 papE fimbrial protein F7-2 precursor - Escherichia coli, gi\|147094\|gb\|AAA24291.1\| papE ...	164.0	[0..1]	[138..36]
gi\|91213837, gi\|... - gi\|91213837\|ref\|YP_543823.1\| minor pilin subunit PapE [Escherichia coli UTI89], gi\|91075411\|gb\|ABE10...	154.0	[0..1]	[138..36]
gi\|110346234, gi... - gi\|110644642\|ref\|YP_672372.1\| PapE protein [Escherichia coli 536], gi\|110346234\|gb\|ABG72471.1\| PapE ...	152.0	[0..1]	[138..21]

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Predicted Domain #1

Region A:
Residues: [1-138]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPACTVSNTT VDWQDVEIQT LSQNGNHEKE FTVNXRCPYN LGTXKVTITA TNTYNNAILV  60
   61 QNTSNTSSDG LLVYLYNSNA GNIGTAITLG TPFTPGKITG NNADKTISLH AKLGYKGNXQ 120
  121 NLIAGPFSAT ATLVASYS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	36.0
Match:	1n0lB
Description:	PapE pilus subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits