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View Structure Prediction Details

Protein: gi|27573956, gi|...
Organism: Homo sapiens
Length: 96 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27573956, gi|....

Description E-value Query
Range
Subject
Range
gi|109071303 - gi|109071303|ref|XP_001089925.1| PREDICTED: similar to vascular endothelial growth factor isoform d ...
166.0 [0..2] [96..516]
gi|76781485, gi|... - gi|76781485|ref|NP_001020541.2| vascular endothelial growth factor A isoform f precursor [Homo sapie...
165.0 [0..2] [96..220]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVKFMDVYQ RSYCHPIETL VDIFQEYPDE IEYIFKPSCV PLMRCGGCAN DEGLECVPTE  60
   61 ESNITMQIMR IKPHQGQHIG EMSFLQHNKC EARPKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.39794
Match: 1bj1V
Description: Vascular endothelial growth factor, VEGF
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.587687438033265 bayes_pls_golite062009
protein binding 0.53742562922963 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle