YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27573841
Organism:	Homo sapiens
Length:	206 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27573841.

Description	E-value	Query Range	Subject Range
NOGG_MOUSE - Noggin OS=Mus musculus GN=Nog PE=2 SV=1 gi\|34873295, gi\|... - ref\|XP_343955.1\| similar to noggin [Rattus norvegicus], gi\|158187531\|ref\|NP_037122.1\| noggin [Rattu...	315.0	[0..2]	[206..28]
gi\|60810121 - gi\|60810121\|gb\|AAX36116.1\| noggin [synthetic construct]	315.0	[0..2]	[206..28]
gi\|109114412 - gi\|109114412\|ref\|XP_001104355.1\| PREDICTED: noggin [Macaca mulatta] NOG - noggin	315.0	[0..2]	[206..28]
gi\|114669450 - gi\|114669450\|ref\|XP_523802.2\| PREDICTED: noggin [Pan troglodytes]	314.0	[0..2]	[206..28]
gi\|109488785 - gi\|109488785\|ref\|XP_343955.3\| PREDICTED: similar to Noggin precursor [Rattus norvegicus]	314.0	[0..2]	[206..382]
gi\|76642650 - gi\|76642650\|ref\|XP_582573.2\| PREDICTED: similar to Noggin precursor [Bos taurus]	307.0	[0..2]	[206..257]
gi\|21105761 - gi\|21105761\|gb\|AAM34779.1\|AF510666_1 noggin [Equus caballus]	303.0	[0..2]	[201..28]
gi\|60499110 - gi\|60499110\|gb\|AAR03825.2\| noggin [Trachemys scripta]	301.0	[0..2]	[206..27]

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Predicted Domain #1

Region A:
Residues: [1-206]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQHYLHIRPA PSDNLPLVDL IEHPDPIFDP KEKDLNETLL RSLLGGHYDP GFMATSPPED  60
   61 RPGGGGGAAG GAEDLAELDQ LLRQRPSGAM PSEIKGLEFS EGLAQGKKQR LSKKLRRKLQ 120
  121 MWLWSQTFCP VLYAWNDLGS RFWPRYVKVG SCFSKRSCSV PEGMVCKPSK SVHLTVLRWR 180
  181 CQRRGGQRCG WIPIQYPIIS ECKCSC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	85.221849
Match:	1m4uA
Description:	Noggin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits