YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27573793
Organism:	Homo sapiens
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27573793.

Description	E-value	Query Range	Subject Range
gi\|68371668 - gi\|68371668\|ref\|XP_689968.1\| PREDICTED: similar to thrombospondin [Danio rerio]	180.0	[0..1]	[113..1621]
gi\|73961211 - gi\|73961211\|ref\|XP_547438.2\| PREDICTED: similar to High Incidence of Males (increased X chromosome l...	167.0	[0..3]	[113..4532]
gi\|109498009 - gi\|109498009\|ref\|XP_222716.4\| PREDICTED: similar to hemicentin 1 [Rattus norvegicus]	167.0	[0..2]	[113..4585]
gi\|31083306 - gi\|31083306\|ref\|NP_114141.1\| hemicentin 1 [Homo sapiens]	165.0	[0..2]	[113..4587]
gi\|114568425 - gi\|114568425\|ref\|XP_514061.2\| PREDICTED: hemicentin 1 [Pan troglodytes]	164.0	[0..2]	[113..4586]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDGGWSHWSP WSSCSVTCGD GVITRIRLCN SPSPQMNGKP CEGEARETKA CKKDACPING  60
   61 GWGPWSPWDI CSVTCGGGVQ KRSRLCNNPT PQFGGKDCVG DVTENQICNK QDC

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1lslA
Description:	Thrombospondin-1 (TSP-1)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits