YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15825730, gi\|...
Organism:	Homo sapiens
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15825730, gi|....

Description	E-value	Query Range	Subject Range
gi\|188672 - gi\|188672\|gb\|AAA59866.1\| mannose 6-phosphate receptor [Homo sapiens]	189.0	[0..1]	[143..1508]
gi\|14647151 - gi\|14647151\|gb\|AAK71867.1\|AF339161_1 mannose-6-phosphate/insulin-like growth factor II receptor [Tup...	183.0	[0..1]	[143..1455]
MPRI_BOVIN - Cation-independent mannose-6-phosphate receptor OS=Bos taurus GN=IGF2R PE=1 SV=2	183.0	[0..1]	[143..1517]
gi\|14647145 - gi\|14647145\|gb\|AAK71864.1\|AF339158_1 mannose-6-phosphate/insulin-like growth factor II receptor [Ory...	183.0	[0..1]	[143..1447]
gi\|1398935, gi\|6... - gi\|6981078\|ref\|NP_036888.1\| insulin-like growth factor 2 receptor [Rattus norvegicus], gi\|1398935\|gb...	182.0	[0..1]	[143..1497]
gi\|63099710, gi\|... - gi\|73946212\|ref\|XP_541184.2\| PREDICTED: similar to Cation-independent mannose-6-phosphate receptor p...	182.0	[0..1]	[143..1512]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSNEHDDCQ VTNPSTGHLF DLSSLSGRAG FTAAYSEKGL VYMSICGENE NCPPGVGACF  60
   61 GQTRISVGKA NKRLRYVDQV LQLVYKDGSP CPSKSGLSYK SVISFVCRPE AGPTNRPMLI 120
  121 SLDKQTCTLF FSWHTPLACE QAT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.0
Match:	2cnjD
Description:	No description for 2cnjD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits