YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|27065143, gi\|...
Organism:	Haemophilus influenzae
Length:	98 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|27065143, gi|....

Description	E-value	Query Range	Subject Range
gi\|75430394, gi\|... - gi\|75430394\|ref\|ZP_00732755.1\| conserved hypothetical protein HI1333 [Actinobacillus succinogenes 13...	137.0	[0..2]	[98..2]
gi\|52425017, gi\|... - gi\|52425017\|ref\|YP_088154.1\| hypothetical protein MS0962 [Mannheimia succiniciproducens MBEL55E], gi...	136.0	[0..2]	[98..38]
gi\|15602578, gi\|... - gi\|15602578\|ref\|NP_245650.1\| hypothetical protein PM0713 [Pasteurella multocida subsp. multocida str...	134.0	[0..2]	[98..4]
gi\|23467071, gi\|... - gi\|23467071\|ref\|ZP_00122656.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	132.0	[0..2]	[98..2]
gi\|148718210, gi... - gi\|148826968\|ref\|YP_001291721.1\| 23S rRNA methyltransferase J [Haemophilus influenzae PittGG], gi\|14... gi\|145271884, gi... - gi\|145638912\|ref\|ZP_01794520.1\| transcription elongation factor GreA [Haemophilus influenzae PittII]... gi\|145641636, gi... - gi\|145641636\|ref\|ZP_01797213.1\| 23S rRNA methyltransferase J [Haemophilus influenzae R3021], gi\|1449... gi\|145273683, gi... - gi\|145641636\|ref\|ZP_01797213.1\| 23S rRNA methyltransferase J [Haemophilus influenzae R3021], gi\|1456... gi\|68250002, gi\|... - gi\|68250002\|ref\|YP_249114.1\| RNA-binding protein [Haemophilus influenzae 86-028NP], gi\|68058201\|gb\|A... gi\|145267820, gi... - gi\|145634954\|ref\|ZP_01790661.1\| transcription elongation factor GreA [Haemophilus influenzae PittAA]... Y1333_HAEIN, YD3... - (P71376) Hypothetical UPF0044 protein HI1333, RNA-binding protein HI_1333 OS=Haemophilus influenzae ... gi\|144978261, gi... - gi\|145629418\|ref\|ZP_01785216.1\| transcription elongation factor GreA [Haemophilus influenzae 22.1-21... Y1333_HAEIN - RNA-binding protein HI_1333 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN... gi\|42631767 - gi\|42631767\|ref\|ZP_00157305.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly... gi\|42629492 - gi\|42629492\|ref\|ZP_00155038.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly... gi\|229809633, gi... - gi\|229847492\|ref\|ZP_04467589.1\| 23S rRNA methyltransferase J [Haemophilus influenzae 7P49H1], gi\|229...	132.0	[0..1]	[98..2]
gi\|168825857, gi... - gi\|32029182\|ref\|ZP_00132246.1\| COG1534: Predicted RNA-binding protein containing KH domain, possibly...	130.0	[0..2]	[98..2]
gi\|56421058, gi\|... - gi\|56421058\|ref\|YP_148376.1\| hypothetical protein GK2523 [Geobacillus kaustophilus HTA426], gi\|56380...	130.0	[0..2]	[96..1]
gi\|109700171, gi... - gi\|76794982\|ref\|ZP_00777431.1\| Protein of unknown function UPF0044 [Pseudoalteromonas atlantica T6c]...	128.0	[0..2]	[98..23]
gi\|152025515, gi... - gi\|89201417\|ref\|ZP_01180158.1\| Protein of unknown function UPF0044 [Bacillus cereus subsp. cytotoxis...	128.0	[0..2]	[96..1]
gi\|70726321, gi\|... - gi\|70726321\|ref\|YP_253235.1\| hypothetical protein SH1320 [Staphylococcus haemolyticus JCSC1435], gi\|...	126.0	[0..2]	[96..1]

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Predicted Domain #1

Region A:
Residues: [1-98]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TTLSTKQKQF LKGLAHHLNP VVMLGGNGLT EGVLAEIENA LNHHELIKVK VAGADRETKQ  60
   61 LIINAIVRET KAAQVQTIGH ILVLYRPSEE AKIQLPRK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.522879
Match:	1jo0A
Description:	YhbY homologue HI1333
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits