YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|5902586
Organism:	Volvox carteri f. nagariensis
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|5902586.

Description	E-value	Query Range	Subject Range
gi\|74272701 - gi\|74272701\|gb\|ABA01146.1\| chloroplast photosystem I subunit N [Chlamydomonas incerta]	199.0	[0..1]	[138..1]
gi\|19095 - gi\|19095\|emb\|CAA47056.1\| photosystem I subunit N [Hordeum vulgare subsp. vulgare] PSAN_HORVU - Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1	187.0	[0..3]	[132..9]
gi\|12744797 - gi\|12744797\|gb\|AAK06774.1\|AF323725_1 PsaN precursor [Chlamydomonas reinhardtii]	184.0	[0..1]	[138..1]
PSAN_ARATH - Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2	178.0	[0..19]	[132..48]
gi\|113648841, gi... - gi\|77553228\|gb\|ABA96024.1\| Photosystem I reaction centre subunit N, chloroplast precursor, putative,...	176.0	[0..3]	[132..9]
gi\|92876000 - gi\|92876000\|gb\|ABE83768.1\| Photosystem I reaction centre subunit N [Medicago truncatula]	160.0	[0..4]	[132..37]
PSAN_MAIZE - Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=2 SV=1	160.0	[0..46]	[132..20]
gi\|37927472 - gi\|37927472\|gb\|AAP69817.1\| putative photosystem I reaction center subunit N precursor [Vitis vinifer...	154.0	[0..56]	[132..3]
gi\|28629385 - gi\|28629385\|gb\|AAO49652.1\| photosystem I-N subunit [Phaseolus vulgaris]	154.0	[0..8]	[132..37]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVAMRAQCA KVQAARPARA TTVVCRASAQ SRRELLGLGV LLGAAALAPA ANAGVVEDLL  60
   61 AKSAANKALN NKKRLATSYA NLARSRTVYD GTCQFPENFF GCEELAFNKG VKYIAEDLKI 120
  121 ECEGKDAKSC GSKFTLRSK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.39794
Match:	2o01N
Description:	No description for 2o01N was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits