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View Structure Prediction Details

Protein: gi|22328924, gi|...
Organism: Arabidopsis thaliana
Length: 110 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22328924, gi|....

Description E-value Query
Range
Subject
Range
gi|110736294, gi... - gi|7669953|emb|CAB89240.1| putative protein [Arabidopsis thaliana], gi|27808562|gb|AAO24561.1| At3g5...
172.0 [0..5] [108..6]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIRVTVSRSN TVASYCLVAL LILTLAGSVK NSNGGGSGEY YRGRNCEVWR GKQMMERPCE  60
   61 ELYVVGEGDT LHSISEKCGD PFIVERNPHI HDPDDVFPGL LIKLHINLPE 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.425 d.68.5 C-terminal domain of ProRS
View Download 0.414 c.51.1 Anticodon-binding domain of Class II aaRS
View Download 0.366 g.28.1 Thyroglobulin type-1 domain
View Download 0.338 a.4.5 "Winged helix" DNA-binding domain
View Download 0.317 a.109.1 Class II MHC-associated invariant chain ectoplasmic trimerization domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle