| Protein: | RIBA2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 476 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RIBA2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
616.0 | [0..1] | [475..1] |
|
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608.0 | [0..1] | [475..1] |
|
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603.0 | [0..18] | [472..31] |
|
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592.0 | [0..3] | [475..21] |
|
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584.0 | [0..106] | [476..9] |
|
|
579.0 | [0..104] | [476..1] |
|
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567.0 | [0..54] | [475..1] |
|
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566.0 | [0..107] | [476..2] |
|
|
562.0 | [0..104] | [476..1] |
|
|
562.0 | [0..104] | [475..1] |
|
Region A: Residues: [1-103] |
1 11 21 31 41 51
| | | | | |
1 MASLTLRCDS THLLPSRDVV KGTKPFGTSL VYPRIISKKF NVRMRVIPEE GDVFSSSKSN 60
61 GSSMGIELQP DLVSFGTLAA EMIPTTMDSP EVEDEEFDLD RPT
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.426 | b.55.1 | PH domain-like |
| View | Download | 0.426 | b.55.1 | PH domain-like |
| View | Download | 0.351 | b.55.1 | PH domain-like |
| View | Download | 0.339 | b.55.1 | PH domain-like |
| View | Download | 0.339 | b.55.1 | PH domain-like |
| View | Download | 0.322 | c.47.1 | Thioredoxin-like |
| View | Download | 0.322 | b.55.1 | PH domain-like |
| View | Download | 0.322 | b.55.1 | PH domain-like |
| View | Download | 0.293 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.278 | b.61.3 | D-aminopeptidase, middle and C-terminal domains |
| View | Download | 0.231 | b.55.1 | PH domain-like |
| View | Download | 0.216 | d.93.1 | SH2 domain |
| View | Download | 0.216 | b.55.1 | PH domain-like |
| View | Download | 0.215 | d.52.6 | BolA-like |
|
Region A: Residues: [104-316] |
1 11 21 31 41 51
| | | | | |
1 DGFASIPQAI EDIRHGKMVV VVDDEDRENE GDLIMAASLA TPEAMAFVVK HGTGIVCVSM 60
61 KGEDLERLEL PLMVTRKDNE EKLRTAFTVS VDAKKGTSTG VSARDRAQTI LTLASKDSKP 120
121 EDFNRPGHIF PLRYREGGVL KRAGHTEASV DLTVLAGLEP VSVLCEIVDD DGSMARLPRL 180
181 RQFAQENNLK LISIADLIRY RRKRERLVEF TAV
|
| Detection Method: | |
| Confidence: | 82.522879 |
| Match: | 1iezA |
| Description: | 3,4-dihydroxy-2-butanone 4-phosphate synthase, DHBP synthase, RibB |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [317-476] |
1 11 21 31 41 51
| | | | | |
1 APIPTMWGPF KAHCFKSLLD GVEHIAMVKG EIGDGKDILV RVHAECITDD IFGNSSGGKQ 60
61 LAIAMRLIEE NGRGVFVYLR GPESKGIDLS HKPRTYNTNS DQAEGVSFPV ASREYGIGAQ 120
121 ILRDLGVREM KVMTNNPAHY VGLKGYGLSI SGKVPLITTP
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| Detection Method: | |
| Confidence: | 61.522879 |
| Match: | 2bz0A |
| Description: | Crystal Structure of E. coli GTP cyclohydrolase II in complex with GTP analogue, GMPcPP, and Zinc |
Matching Structure (courtesy of the PDB): |
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