YRC Public Data Repository - Protein Structure Prediction

Protein:	PTHM_ARATH
Organism:	Arabidopsis thaliana
Length:	219 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTHM_ARATH.

Description	E-value	Query Range	Subject Range
PTHC_ARATH - Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2	298.0	[0..1]	[211..77]
gi\|225862104, gi... - gi\|225862104\|ref\|YP_002747482.1\| peptidyl-tRNA hydrolase [Bacillus cereus 03BB102], gi\|225790416\|gb\|... gi\|227002837, gi... - gi\|227812725\|ref\|YP_002812734.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. CDC 684], gi\|22700... gi\|228815815, gi... - gi\|228943858\|ref\|ZP_04106244.1\| Peptidyl-tRNA hydrolase [Bacillus thuringiensis serovar monterrey BG... gi\|228694146, gi... - gi\|229089183\|ref\|ZP_04220465.1\| Peptidyl-tRNA hydrolase [Bacillus cereus Rock3-42], gi\|228694146\|gb\|... gi\|229182446, gi... - gi\|229182446\|ref\|ZP_04309698.1\| Peptidyl-tRNA hydrolase [Bacillus cereus BGSC 6E1], gi\|228601026\|gb\|... gi\|229602955, gi... - gi\|229602955\|ref\|YP_002864703.1\| aminoacyl-tRNA hydrolase [Bacillus anthracis str. A0248], gi\|229267... gi\|254724192 - gi\|254724192\|ref\|ZP_05185977.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A1055] gi\|170127525, gi... - gi\|170707529\|ref\|ZP_02897982.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0389], gi\|17012752... gi\|170688886, gi... - gi\|170688886\|ref\|ZP_02880088.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0465], gi\|17066711... gi\|190559880, gi... - gi\|190568956\|ref\|ZP_03021857.1\| peptidyl-tRNA hydrolase [Bacillus anthracis Tsiankovskii-I], gi\|1905... gi\|177655322, gi... - gi\|177655322\|ref\|ZP_02936851.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0174], gi\|17208016... gi\|196027394, gi... - gi\|196041774\|ref\|ZP_03109064.1\| peptidyl-tRNA hydrolase [Bacillus cereus NVH0597-99], gi\|196027394\|g... gi\|196036361, gi... - gi\|196036361\|ref\|ZP_03103758.1\| peptidyl-tRNA hydrolase [Bacillus cereus W], gi\|195990991\|gb\|EDX5496... gi\|196021792, gi... - gi\|196047390\|ref\|ZP_03114603.1\| peptidyl-tRNA hydrolase [Bacillus cereus 03BB108], gi\|196021792\|gb\|E... gi\|65317511, gi\|... - gi\|65317511\|ref\|ZP_00390470.1\| COG0193: Peptidyl-tRNA hydrolase [Bacillus anthracis str. A2012], ref... gi\|165872550, gi... - gi\|165872550\|ref\|ZP_02217182.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0488], gi\|16471167... gi\|167641506, gi... - gi\|167641506\|ref\|ZP_02399754.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0193], gi\|16751049... gi\|167529527, gi... - gi\|167635053\|ref\|ZP_02393370.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. A0442], gi\|16752952...	286.0	[0..9]	[204..13]
gi\|58743494 - gi\|58743494\|gb\|AAW81735.1\| Putative Putative Pepidyl-tRNA hydrolase family protein [Brassica olerace...	285.0	[0..19]	[211..98]
PTH_CHLAA - Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=pth P... PTH_CHLSY - Peptidyl-tRNA hydrolase OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=pth ...	285.0	[0..18]	[203..1]
gi\|42779130, gi\|... - gi\|42779130\|ref\|NP_976377.1\| peptidyl-tRNA hydrolase [Bacillus cereus ATCC 10987], gi\|42735045\|gb\|AA...	284.0	[0..9]	[204..16]
gi\|89084789, gi\|... - gi\|89100523\|ref\|ZP_01173384.1\| peptidyl-tRNA hydrolase [Bacillus sp. NRRL B-14911], gi\|89084789\|gb\|E...	284.0	[0..18]	[203..1]
gi\|75759613, gi\|... - gi\|75759613\|ref\|ZP_00739699.1\| Peptidyl-tRNA hydrolase [Bacillus thuringiensis serovar israelensis A... gi\|29893862, gi\|... - gi\|30018322\|ref\|NP_829953.1\| peptidyl-tRNA hydrolase [Bacillus cereus ATCC 14579], gi\|29893862\|gb\|AA...	284.0	[0..9]	[204..16]
gi\|47500452, gi\|... - gi\|47525304\|ref\|YP_016653.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. 'Ames Ancestor'], gi\|4... gi\|30260242, gi\|... - gi\|30260242\|ref\|NP_842619.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. Ames], gi\|30253563\|gb\|... PTH_BACAN - Peptidyl-tRNA hydrolase OS=Bacillus anthracis GN=pth PE=3 SV=1 PTH_BACHK - Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=pth PE=3 SV=1 gi\|49183085, gi\|... - gi\|49183085\|ref\|YP_026337.1\| peptidyl-tRNA hydrolase [Bacillus anthracis str. Sterne], gi\|49177012\|g... PTH_BACHK - Peptidyl-tRNA hydrolase OS=Bacillus thuringiensis subsp. konkukian GN=pth PE=3 SV=1	283.0	[0..18]	[204..1]
PTH_SHIBS - Peptidyl-tRNA hydrolase OS=Shigella boydii serotype 4 (strain Sb227) GN=pth PE=3 SV=1	283.0	[0..16]	[206..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRLSRRCY CTSSVHRPWL FLGLGNPGDK YKGTRHNIGF EMIDVFAESV GIQMNLVNFK  60
   61 AIMGQGFVAD LPVILAKPQT YMNLSGESSG PLAAYYKLPL NRVLVVHDDM QLPCGVLRLQ 120
  121 EKGGHGCHNG LKSVMNHFRG NREFARLRIG IGKPPGQMDP KAFLLQKFSM PARERMDKAL 180
  181 AEGVDALKLV LAKDFGESWR LFNVEQKYKH LKQHTILSA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.221849
Match:	1rymA
Description:	Structure of the Group II Intron Splicing Factor CRS2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits