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View Structure Prediction Details

Protein: gi|110738199, gi...
Organism: Arabidopsis thaliana
Length: 168 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110738199, gi....

Description E-value Query
Range
Subject
Range
gi|186684006, gi... - gi|23125131|ref|ZP_00107078.1| COG0681: Signal peptidase I [Nostoc punctiforme PCC 73102], gi|186684...
178.0 [0..7] [167..9]

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Predicted Domain #1
Region A:
Residues: [1-107]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRMTFLSYLK QWRGTAKEAF ENVSIVAKFL CLLHVTDRYI ISTTHVHGPS MLPTLNLTGD  60
   61 VILAEHLSHR FGKIGLGDVV LVRSPRDPKR MVTKRILGLE GDRLTFS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.69897
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [108-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ADPLVGDASV SVLVPKGHVW IQGDNLYAST DSRHFGPVPY SLIEGKALLR VWPPEYFGSL  60
   61 R

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.9
Match: 1t7dA
Description: Crystal structure of Escherichia coli type I signal peptidase in complex with a lipopeptide inhibitor
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle