YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCS1_CAEBR
Organism:	Caenorhabditis briggsae
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCS1_CAEBR.

Description	E-value	Query Range	Subject Range
gi\|109039192 - gi\|109039192\|ref\|XP_001085058.1\| PREDICTED: similar to Signal peptidase complex subunit 1 (Microsoma...	156.0	[0..6]	[113..284]
gi\|50754117 - gi\|50754117\|ref\|XP_414251.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	153.0	[0..6]	[113..99]
SPCS1_PONAB - Signal peptidase complex subunit 1 OS=Pongo abelii GN=SPCS1 PE=3 SV=1 SPCS1 - signal peptidase complex subunit 1 homolog (S. cerevisiae) ENSPTRT00000028110 - null SPCS1_PONPY - Signal peptidase complex subunit 1 - Pongo pygmaeus (Orangutan)	146.0	[0..7]	[113..1]
SPCS1_BOVIN - Signal peptidase complex subunit 1 OS=Bos taurus GN=SPCS1 PE=3 SV=1	146.0	[0..7]	[113..1]
gi\|73985289, gi\|... - gi\|73985289\|ref\|XP_858931.1\| PREDICTED: similar to Microsomal signal peptidase 12 kDa subunit (SPase...	145.0	[0..7]	[113..1]
SP12_MOUSE, SPCS... - Signal peptidase complex subunit 1 OS=Mus musculus GN=Spcs1 PE=2 SV=2, (Q9D958) Microsomal signal pe...	143.0	[0..7]	[113..1]
gi\|72153363, gi\|... - gi\|72153363\|ref\|XP_788906.1\| PREDICTED: similar to microsomal signal peptidase subunit [Strongylocen...	138.0	[0..12]	[111..4]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGMIAMLPA PLQQLSSHID FQGQKVAERT YQVILTLAGI IGFFVGYSTQ QLSYAMYTVM  60
   61 GAAVFTALII LPPWPFLFRK NPIVWQTPIE EQEASSSSDN EKKDKKKETK KTK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.69897
Match:	PF06645.4
Description:	No description for PF06645.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.904	N/A	N/A	a.8.4	Description not found.
View	Download	0.785	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.785	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.752	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.752	N/A	N/A	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.749	N/A	N/A	a.29.13	Description not found.
View	Download	0.733	N/A	N/A	a.47.2	t-snare proteins
View	Download	0.624	N/A	N/A	a.7.8	GAT domain
View	Download	0.619	N/A	N/A	b.88.1	Mss4-like
View	Download	0.563	N/A	N/A	a.78.1	Fatty acid responsive transcription factor FadR, C-terminal domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits