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View Structure Prediction Details

Protein: RBOHB_ARATH
Organism: Arabidopsis thaliana
Length: 843 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for RBOHB_ARATH.

Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREEEMESSS EGETNKISRC KATGSDNPDE DYVEITLEVR DETINTMKAK ATLRSVLSGR  60
   61 LKTMVKSLSF ASRRLDRSKS FGAMFALRGL RFIAKNDAVG RGWDEVAMRF DKLAVEGKLP 120
  121 KSKFGHCIGM VESSEFVNEL FEALVRRRGT TSSSITKTEL FEFWEQITGN SFDDRLQIFF 180
  181 DMVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 2f2oA
Description: Structure of calmodulin bound to a calcineurin peptide: a new way of making an old binding mode
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [185-395]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNLDGRITGD EVKEIIALSA SANKLSKIKE NVDEYAALIM EELDRDNLGY IELHNLETLL  60
   61 LQVPSQSNNS PSSANKRALN KMLSQKLIPT KDRNPVKRFA MNISYFFLEN WKRIWVLTLW 120
  121 ISICITLFTW KFLQYKRKTV FEVMGYCVTV AKGSAETLKF NMALILLPVC RNTITWLRTK 180
  181 SKLIGSVVPF DDNINFHKVV AFGIAVGIGL H

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [396-843]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AISHLACDFP RLLHAKNVEF EPMKKFFGDE RPENYGWFMK GTDGWTGVTM VVLMLVAYVL  60
   61 AQSWFRRNRA NLPKSLKRLT GFNAFWYSHH LFVIVYVLLI VHGYFVYLSK EWYHKTTWMY 120
  121 LAVPVLLYAF ERLIRAFRPG AKAVKVLKVA VYPGNVLSLY MSKPKGFKYT SGQYIYINCS 180
  181 DVSPLQWHPF SITSASGDDY LSVHIRTLGD WTSQLKSLYS KVCQLPSTSQ SGLFIADIGQ 240
  241 ANNITRFPRL LIDGPYGAPA QDYRNYDVLL LVGLGIGATP LISIIRDVLN NIKNQNSIER 300
  301 GTNQHIKNYV ATKRAYFYWV TREQGSLEWF SEVMNEVAEY DSEGMIELHN YCTSVYEEGD 360
  361 ARSALITMLQ SLHHAKSGID IVSGTRVRTH FARPNWRSVF KHVAVNHVNQ RVGVFYCGNT 420
  421 CIIGELKRLA QDFSRKTTTK FEFHKENF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 42.09691
Match: 1cqxA
Description: Flavohemoglobin, N-terminal domain; Flavohemoglobin, central domain; Flavohemoglobin, C-terminal domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle