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View Structure Prediction Details

Protein: GASA6_ARATH
Organism: Arabidopsis thaliana
Length: 101 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GASA6_ARATH.

Description E-value Query
Range
Subject
Range
gi|25313150, gi|... - gi|2982285|gb|AAC32128.1| GASA5-like protein [Picea mariana], pir||T51963 GASA5-like protein [import...
116.0 [0..1] [101..1]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKLITSFLL LTILFTFVCL TMSKEAEYHP ESYGPGSLKS YQCGGQCTRR CSNTKYHKPC  60
   61 MFFCQKCCAK CLCVPPGTYG NKQVCPCYNN WKTQQGGPKC P

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 45.721246
Match: PF02704.5
Description: No description for PF02704.5 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.559 N/A N/A a.4.5 "Winged helix" DNA-binding domain
View Download 0.440 N/A N/A a.4.1 Homeodomain-like
View Download 0.389 N/A N/A a.118.11 Cytochrome c oxidase subunit E
View Download 0.374 N/A N/A a.118.11 Cytochrome c oxidase subunit E
View Download 0.370 N/A N/A a.27.1 Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases


YRC Informatics Platform - Version 3.0
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