YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42822063, gi\|...
Organism:	Arabidopsis thaliana
Length:	144 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42822063, gi|....

Description	E-value	Query Range	Subject Range
gi\|30697242, gi\|... - gi\|88900382\|gb\|ABD57503.1\| At5g59510 [Arabidopsis thaliana], gi\|42822069\|tpg\|DAA02289.1\| TPA_exp: DV...	100.0	[0..1]	[144..1]
gi\|10140754, gi\|... - gi\|37536566\|ref\|NP_922585.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gb\|AAP54...	97.0	[0..55]	[143..277]
gi\|92873568, gi\|... - gi\|92879537\|gb\|ABE85581.1\| DVL [Medicago truncatula], gi\|92873568\|gb\|ABE81994.1\| hypothetical protei...	66.0	[0..65]	[144..23]

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Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVEKLWNHT KKDSIFQTTH FSSSSKPFFT RSFSTKTSSS PSSKSHFTRS FSTKPSSSSS  60
   61 SSDLIFRRSF SAKPKTSKSL LLSRSCSTKS SADLSSKSSS LSRILSKKGA SVTGKCFKVA 120
  121 KEHKSRFYII KRCVLMLVCW HKHS

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Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits