YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|42822049, gi\|...
Organism:	Arabidopsis thaliana
Length:	79 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42822049, gi|....

Description	E-value	Query Range	Subject Range
gi\|115440997, gi... - gi\|56784250\|dbj\|BAD81745.1\| unknown protein [Oryza sativa Japonica Group], gi\|115440997\|ref\|NP_00104...	73.0	[0..11]	[72..11]
gi\|30697242, gi\|... - gi\|88900382\|gb\|ABD57503.1\| At5g59510 [Arabidopsis thaliana], gi\|42822069\|tpg\|DAA02289.1\| TPA_exp: DV...	70.0	[0..7]	[75..67]
gi\|92875673 - gi\|92875673\|gb\|ABE83577.1\| conserved hypothetical protein [Medicago truncatula]	68.0	[0..28]	[74..43]

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Predicted Domain #1

Region A:
Residues: [1-79]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRLRNSAQL QLSKKESLGD NGGALNTTRS SRQKQGKYGF TRKCGRLVKE QRARFYIMRR  60
   61 CVVMLICWTD HNNNNSDHS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits