YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12006939, gi\|...
Organism:	Arabidopsis thaliana
Length:	556 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12006939, gi|....

Description	E-value	Query Range	Subject Range
gi\|91079840 - gi\|91079840\|ref\|XP_970507.1\| PREDICTED: similar to CCR4-NOT transcription complex, subunit 3 [Tribol...	236.0	[0..134]	[550..237]
gi\|73946893 - gi\|73946893\|ref\|XP_862826.1\| PREDICTED: similar to CCR4-NOT transcription complex subunit 3 (CCR4-as...	235.0	[0..204]	[550..248]
gi\|66550449 - gi\|66550449\|ref\|XP_395261.2\| PREDICTED: similar to lethal (2) NC136 CG8426-PA [Apis mellifera]	233.0	[0..287]	[550..399]
gi\|40788331 - gi\|40788331\|dbj\|BAA31666.2\| KIAA0691 protein [Homo sapiens]	222.0	[0..105]	[550..306]
gi\|114678945 - gi\|114678945\|ref\|XP_512885.2\| PREDICTED: similar to KIAA0691 protein [Pan troglodytes]	220.0	[0..186]	[550..296]
gi\|34854462 - gi\|34854462\|ref\|XP_218187.2\| PREDICTED: similar to CCR4-NOT transcription complex, subunit 3 [Rattus...	219.0	[0..108]	[550..297]
CNOT3_MOUSE - CCR4-NOT transcription complex subunit 3 OS=Mus musculus GN=Cnot3 PE=1 SV=1	219.0	[0..108]	[550..297]
gi\|115671937, gi... - gi\|115704832\|ref\|XP_782846.2\| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus], gi\|11...	218.0	[0..101]	[550..430]

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Predicted Domain #1

Region A:
Residues: [1-416]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQGTLTSRNS SMNSIPSAGV QQPNGSFSSG RFASNNLPVN LSQLSHGSSH GHSGIPNRGL  60
   61 NVVGNPGFSS NANGVGGSIP GILSTSAGLS NRNSVPGMGI SQLLGNSGPR ITNSMGNMVG 120
  121 GGNLGRNISS GGLSIPGLSS RLNLAANSGS GLNVQGQNRM MGGVLPQGSQ VMSMLGNSYH 180
  181 TGGGPLSQNH VQSVNNMMLS DHPNDSSLFD INNDFPQLTS RPGSAGGTQG HLGSLRKQGL 240
  241 GVPLVQQNQE FSIQNEDFPA LPGYKGGNSE YPMDLHQKEQ LHDNAMSMMH SQNFSMGRSG 300
  301 GFNLGATYSS HRPQQQPQHT SSTGGLQGLG LRPLSSPNAV SSIGYDQLIQ QYQQHQNQSQ 360
  361 FPVQQMSSIN QFRDSEMKST QSEADPFCLL GLLDVLNRSN PELTSLALGI DLTTLG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.522879
Match:	1y0fB
Description:	No description for 1y0fB was found.

Predicted Domain #2

Region A:
Residues: [417-556]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LDLNSTGNLY KTFASPWTNE PAKSEVEFTV PNCYYATEPP PLTRASFKRF SYELLFYTFY  60
   61 SMPKDEAQLY AADELYERGW FYHKELRVWF FRVGEPLVRA ATYERGTYEY LDPNSFKTVR 120
  121 KEHFVIKYEL MEKRPSLLQL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	71.026872
Match:	PF04153.9
Description:	No description for PF04153.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits