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View Structure Prediction Details

Protein: GATL3_ARATH
Organism: Arabidopsis thaliana
Length: 345 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GATL3_ARATH.

Description E-value Query
Range
Subject
Range
gi|21554300 - gi|21554300|gb|AAM63375.1| putative glycosyl transferase [Arabidopsis thaliana]
257.0 [0..2] [340..8]

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Predicted Domain #1
Region A:
Residues: [1-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLRLRLCL LLLLPITISC VTVTLTDLPA FREAPAFRNG RECSKTTWIP SDHEHNPSII  60
   61 HIAMTLDAIY LRGSVAGVFS VLQHASCPEN IVFHFIATHR RSADLRRIIS STFPYLTYHI 120
  121 YHFDPNLVRS KISSSIRRAL DQPLNYARIY LADLLPIAVR RVIYFDSDLV VVDDVAKLWR 180
  181 IDLRRHVVGA PEYCHANFTN YFTSRFWSSQ GYKSALKDRK PCYFNTGVMV IDLGKWRERR 240
  241 VTVKLETWMR IQKRHRIYEL GSLPPFLLVF AGDVEPVEHR WNQHGLGGDN LEGLCRNLHP 300
  301 GPVSLLHWSG KGKPWLRLDS RRPCPLDSLW APYDLFRYSP LISDS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 38.221849
Match: 1zcvA
Description: apo form of a mutant of glycogenin in which Asp159 is replaced by Asn
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.3567084433464 bayes_pls_golite062009
transferase activity 1.04375515050786 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
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