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View Structure Prediction Details

Protein: gi|15221121
Organism: Arabidopsis thaliana
Length: 512 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15221121.

Description E-value Query
Range
Subject
Range
gi|16226853 - gi|16226853|gb|AAL16281.1|AF428351_1 At1g11870/F12F1_29 [Arabidopsis thaliana]
445.0 [0..1] [512..1]

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Predicted Domain #1
Region A:
Residues: [1-75]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLHKLRLAA AVPVTFSSRL FLKPFTNTLT LGLFSRHLQP RNKPLLVRAF SASAAVQDIP  60
   61 ATQTSDSSAR PLWKA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 33.30103
Match: 1tjeA
Description: Crystal structure of the editing domain of threonyl-tRNA synthetase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [76-512]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIDFKWIRDN KEAVEINIRN RNSNANLEAV LQLYENMVNL QKEVERLREE RNNVAKKMKG  60
   61 KLEPSERERL VEEGKNLKES LVTLEEDLVK LKDELQHVAQ SIPNMTHPDV PVGGEDSSAI 120
  121 RQEVGSPREF SFPIKDHLQL GKDLDLIDFD SAAEVSGSKF FYLKNEAVLL EMALLNWTLS 180
  181 QVMKKGYTPL TTPEIVRSSI VEKCGFQPRG DNTQVYSIDG TDQCLIGTAE IPVGGIHMDS 240
  241 ILLESALPLK YIAFSHCFRT EAGAAGAATK GLYRVHQFSK AEMFVICQPE DSESFHQELI 300
  301 QIEEDLFTSL GLHFKTLDMA TADLGAPAYR KFDIEAWMPG LGRFGEISSA SNCTDYQSRR 360
  361 LGIRYRPSEP PQTGPKKGKA NLPATKFVHT LNATACAVPR MMVCLLENYQ QEDGSVVIPE 420
  421 PLRPFMGGIE LIKPKHK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 113.0
Match: 2dq3A
Description: No description for 2dq3A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle