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View Structure Prediction Details

Protein: XRCC1_ARATH
Organism: Arabidopsis thaliana
Length: 353 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for XRCC1_ARATH.

Description E-value Query
Range
Subject
Range
gi|110737739 - gi|110737739|dbj|BAF00808.1| DNA repair protein like XRCC1 [Arabidopsis thaliana]
208.0 [0..1] [353..1]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQKRNLPSW MSSRDPEITP SKSHCKKPKD EGPTEEHNSR NAPSNKSEHA EPSSNTTEFS  60
   61 KLMEGVVFVL SGFVNPERST LRSQALTMGA TYQPDWNAGS TLLICAFPNT PKFRQVETNG 120
  121 GTIISKEWIT ECYAQKKLVD IEQYLMHAGK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 2d8mA
Description: No description for 2d8mA was found.

Predicted Domain #2
Region A:
Residues: [151-353]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PWRKSSSPQD ANREKREHLS KKPEKQVEKK TETRGTPSTS SKNRSACNLV KEPFFVTEVK  60
   61 KWARDDLSQT ISWLESQEEK PEPGEIKRIA AEGVLTCLQD AIDSLEQKQD IGSVTELWSF 120
  121 VPRVVKELGK MESSSKKENS TASKEEVCKQ AKSWKKIYEA ELAKPGEDES TSRVACGYDS 180
  181 DMTVEMTEEE IELAYRNVSL ECL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle