| Protein: | LA2_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 399 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LA2_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
216.0 | [0..22] | [357..49] |
|
Region A: Residues: [1-214] |
1 11 21 31 41 51
| | | | | |
1 MASSFNEETA KKLLTQVEFY FSDSNLPTDG FLNREVTKSK DGLVSLPLVC SFSRMRNLLG 60
61 LGNINREDIP PRIVEEVANL LRTSDFLKVS NNGQRIGRGT KLSKPEEVLE QVHRRTLAAS 120
121 PFEYSIKMED VSSFFSQYAK VNSVRLPPNI ADKRRFCGTA LVEFSSEQDT QDILRQSLVY 180
181 AGADLVLIPK SDFDCQRENM IKQLGKSESH NEFR
|
| Detection Method: |  |
| Confidence: | 37.69897 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
|
Region A: Residues: [215-299] |
1 11 21 31 41 51
| | | | | |
1 RGQIVKFALK WIASEEKVTN KEKPSALKNK IKEKEDKETG IADREKENGD NSCASLCKDN 60
61 TDQLVVPPWN NSNSVSSEVL KDLFQ
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [300-399] |
1 11 21 31 41 51
| | | | | |
1 RFGSVEHIEY SGGLDSGYVW FTDSETAMKA RAAVEFVGGL VVKNNFSVAL EAINGEMERE 60
61 LWKRLSSAEL EGGKEGHKKE KGKDECFENV QPTKKARKEP
|
| Detection Method: | |
| Confidence: | 4.221849 |
| Match: | 1owxA |
| Description: | Lupus LA protein |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.950788308762215 | bayes_pls_golite062009 |
| nucleic acid binding | 0.29562225149076 | bayes_pls_golite062009 |
