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View Structure Prediction Details

Protein: SCAM5_ARATH
Organism: Arabidopsis thaliana
Length: 291 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SCAM5_ARATH.

Description E-value Query
Range
Subject
Range
SCAM3_ARATH - Secretory carrier-associated membrane protein 3 OS=Arabidopsis thaliana GN=SCAMP3 PE=1 SV=1
457.0 [0..1] [291..1]

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Predicted Domain #1
Region A:
Residues: [1-86]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGGRYDRNTF DEQDEVNPFA NPGSVPAASN SRLSPLPPEP AGFGYGRTVD IPLDRPGSGA  60
   61 QDLKKKEKEL QAKEADLRRR EQDLKR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [87-291]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQDAAARAGI VIEAKNWPTF FPLIHHDIAN EILVRLQRLQ YIAFATYLGL VLALFWNIIA  60
   61 VTTAWIKGEG VTIWLLAVIY FISGVPGGYV LWYRPLYRAF RSDSAFNFGW FFLFYMLHIL 120
  121 FCLFAAVAPP IVFKGKSLAG ILPAIDVLSA QALVGIFYFI GFGLFCLESV VSIWVIQQVY 180
  181 MYFRGSGKAD DMRRDAARGA MRAAI

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 112.21467
Match: PF04144.4
Description: No description for PF04144.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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