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View Structure Prediction Details

Protein: QKY_ARATH
Organism: Arabidopsis thaliana
Length: 1081 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for QKY_ARATH.

Predicted Domain #1
Region A:
Residues: [1-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNTTPFHSDP PPSRIQRKLV VEVVEARNIL PKDGQGSSSA YVVVDFDAQK KRTSTKFRDL  60
   61 NPIWNEMLDF AVSDPKNMDY DELDIEVYND KRFGNGGGRK NHFLGRVKIY GSQFSRRGEE 120
  121 GLVYFPLEKK SVFSWIRGEI GLKIYYYDEA ADEDTAGGGG GQQQQQQQQQ FHPPQQEADE 180
  181 QQHQQQFHPP PQQMMNIPPE KPNVVVVEEG RVFESAQSQR YTETH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 25.69897
Match: 2ep6A
Description: No description for 2ep6A was found.

Predicted Domain #2
Region A:
Residues: [226-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QQPPVVIVEE SPPQHVMQGP NDNHPHRNDN HPQRPPSPPP PPSAGEVHYY PPEVRKMQVG  60
   61 RPPGGDRIRV TKRPPNGDYS PRVINSKTGG GETTMEKKT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [325-492]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HHPYNLVEPM QYLFVRIVKA RGLPPNESAY VKVRTSNHFV RSKPAVNRPG ESVDSPEWNQ  60
   61 VFALGHNRSD SAVTGATLEI SAWDASSESF LGGVCFDLSE VPVRDPPDSP LAPQWYRLEG 120
  121 SGADQNSGRI SGDIQLSVWI GTQVDEAFPE AWSSDAPHVA HTRSKVYQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 40.522879
Match: 2r83A
Description: No description for 2r83A was found.

Predicted Domain #4
Region A:
Residues: [493-805]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SPKLWYLRVT VLEAQDLHIA PNLPPLTAPE IRVKAQLGFQ SARTRRGSMN NHSGSFHWHE  60
   61 DMIFVAGEPL EDCLVLMVED RTTKEATLLG HAMIPVSSIE QRIDERFVPS KWHTLEGEGG 120
  121 GGGGGGGPGG GGGGGPYCGR ISLRLCLEGG YHVLEEAAHV CSDFRPTAKQ LWKPPIGILE 180
  181 LGILGARGLL PMKAKNGGKG STDAYCVAKY GKKWVRTRTI TDSFDPRWHE QYTWQVYDPC 240
  241 TVLTVGVFDN WRMFSDASDD RPDTRIGKIR IRVSTLESNK VYTNSYPLLV LLPSGMKKMG 300
  301 EIEVAVRFAC PSL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 45.522879
Match: 1dqvA
Description: Synaptogamin I
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [806-903]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPDVCAAYGQ PLLPRMHYIR PLGVAQQDAL RGAATKMVAA WLARAEPPLG PEVVRYMLDA  60
   61 DSHAWSMRKS KANWYRIVGV LAWAVGLAKW LDNIRRWR

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [904-1081]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPVTTVLVHI LYLVLVWYPD LVVPTAFLYV VMIGVWYYRF RPKIPAGMDI RLSQAETVDP  60
   61 DELDEEFDTI PSSRRPEVIR ARYDRLRILA VRVQTILGDF AAQGERIQAL VSWRDPRATK 120
  121 LFIAICLVIT IVLYAVPAKM VAVALGFYYL RHPMFRDTMP TASLNFFRRL PSLSDRLI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle