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View Structure Prediction Details

Protein: TPS8_ARATH
Organism: Arabidopsis thaliana
Length: 856 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for TPS8_ARATH.

Predicted Domain #1
Region A:
Residues: [1-556]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRSCANFL DLSSWDLLDF PQTPRTLPRV MTVPGIITDV DGDTTSEVTS TSGGSRERKI  60
   61 IVANMLPLQS KRDAETGKWC FNWDEDSLQL QLRDGFSSET EFLYVGSLNV DIETNEQEEV 120
  121 SQKLLEEFNC VATFLSQELQ EMFYLGFCKH QLWPLFHYML PMFPDHGDRF DRRLWQAYVS 180
  181 ANKIFSDRVM EVINPEDDYV WIQDYHLMVL PTFLRKRFNR IKLGFFLHSP FPSSEIYRTL 240
  241 PVRDEILRGL LNCDLIGFHT FDYARHFLSC CSRMLGLDYE SKRGHIGLDY FGRTVYIKIL 300
  301 PVGVHMGRLE SVLSLDSTAA KTKEIQEQFK GKKLVLGIDD MDIFKGISLK LIAMEHLFET 360
  361 YWHLKGKVVL VQIVNPARSS GKDVEEAKRE TYETARRINE RYGTSDYKPI VLIDRLVPRS 420
  421 EKTAYYAAAD CCLVNAVRDG MNLVPYKYIV CRQGTRSNKA VVDSSPRTST LVVSEFIGCS 480
  481 PSLSGAIRVN PWDVDAVAEA VNSALKMSET EKQLRHEKHY HYISTHDVGY WAKSFMQDLE 540
  541 RACRDHYSKR CWGIGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.69897
Match: 1uqtA
Description: Trehalose-6-phosphate from E. coli bound with UDP-2-fluoro glucose.
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [557-856]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLGFRVLSLS PSFRKLSVEH IVPVYRKTQR RAIFLDYDGT LVPESSIVQD PSNEVVSVLK  60
   61 ALCEDPNNTV FIVSGRGRES LSNWLSPCEN LGIAAEHGYF IRWKSKDEWE TCYSPTDTEW 120
  121 RSMVEPVMRS YMEATDGTSI EFKESALVWH HQDADPDFGS CQAKEMLDHL ESVLANEPVV 180
  181 VKRGQHIVEV KPQGVSKGLA AEKVIREMVE RGEPPEMVMC IGDDRSDEDM FESILSTVTN 240
  241 PELLVQPEVF ACTVGRKPSK AKYFLDDEAD VLKLLRGLGD SSSSLKPSSS HTQVAFESIV 300
  301 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.0
Match: 1rkqA
Description: Crystal structure of NYSGRC target T1436: A Hypothetical protein yidA.
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle