YRC Public Data Repository - Protein Structure Prediction

Protein:	P2C14_ARATH
Organism:	Arabidopsis thaliana
Length:	445 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for P2C14_ARATH.

Description	E-value	Query Range	Subject Range
gi\|11072032, gi\|... - pir\|\|H96700 protein F12A21.5 [imported] - Arabidopsis thaliana, gi\|11072032\|gb\|AAG28911.1\|AC008113_...	366.0	[0..1]	[445..1]
gi\|73969501 - gi\|73969501\|ref\|XP_864293.1\| PREDICTED: similar to Protein phosphatase 2C beta isoform (PP2C-beta) i...	282.0	[0..98]	[444..1]
gi\|68303911 - gi\|68303911\|gb\|AAY89642.1\| PPM1B beta isoform variant 6 [Homo sapiens]	282.0	[0..98]	[444..1]
gi\|109102772 - gi\|109102772\|ref\|XP_001111627.1\| PREDICTED: protein phosphatase 1B (formerly 2C), magnesium-dependen...	280.0	[0..98]	[444..1]

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Predicted Domain #1

Region A:
Residues: [1-97]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTNKLRSEET ITSLSSFMAS TLSIASPSPC SIPLSVTKVS PLKRKRPTHL NIPDLNPQQP  60
   61 ISTDYFRFRE GDAKVSPLKR KRPAHLNIPD LNPQQPI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.280	a.7.14	Description not found.
View	Download	0.218	a.24.28	Description not found.
View	Download	0.217	c.30.1	PreATP-grasp domain
View	Download	0.211	a.138.1	Multiheme cytochromes
View	Download	0.208	a.23.4	Mitochondrial import receptor subunit Tom20
View	Download	0.208	a.23.4	Mitochondrial import receptor subunit Tom20

Predicted Domain #2

Region A:
Residues: [98-445]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RTDYFSFTDF AHQNGTVSFG GNGFGVVSRN GKKKFMEDTH RIVPCLVGNS KKSFFGVYDG  60
   61 HGGAKAAEFV AENLHKYVVE MMENCKGKEE KVEAFKAAFL RTDRDFLEKG VVSGACCVTA 120
  121 VIQDQEMIVS NLGDCRAVLC RAGVAEALTD DHKPGRDDEK ERIESQGGYV DNHQGAWRVQ 180
  181 GILAVSRSIG DAHLKKWVVA EPETRVLELE QDMEFLVLAS DGLWDVVSNQ EAVYTVLHVL 240
  241 AQRKTPKESE EENLVQGFVN MSPSSKLRRA SLVKSPRCAK SQSYYYNSEN ESPSLNREIG 300
  301 SSPSKSPITP WKSLWAKAAC KELANLAAKR GSMDDITVVI IDLNHYKG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.30103
Match:	1a6qA
Description:	CRYSTAL STRUCTURE OF THE PROTEIN SERINE/THREONINE PHOSPHATASE 2C AT 2 A RESOLUTION
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits