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View Structure Prediction Details

Protein: OPT2_ARATH
Organism: Arabidopsis thaliana
Length: 734 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for OPT2_ARATH.

Description E-value Query
Range
Subject
Range
gi|91805763 - gi|91805763|gb|ABE65610.1| oligopeptide transporter OPT family protein [Arabidopsis thaliana]
756.0 [0..1] [734..1]

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Predicted Domain #1
Region A:
Residues: [1-66]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAIELHKPE INADDDDDES PVEQVRLTVS NHDDPSLPVW TFRMWFLGLL SCILLSFLNT  60
   61 FFGYRT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [67-324]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPLMITMISV QVVTLPLGKL MARVLPETKY KIGSWEFSFN PGPFNVKEHV LISMFANAGA  60
   61 GFGSGTAYAV GIVDIIMAFY KRKISFLASW ILVITTQILG YGWAGIMRKL VVDPAQMWWP 120
  121 TSVLQVSLFR ALHEKDNARM SRGKFFVIAF VCSFAWYIFP AYLFLTLSSI SWVCWAFPKS 180
  181 ITAQQLGSGM SGLGIGAFAL DWSVIASYLG SPLVTPFFAI VNVLVGYVLV MYMVIPISYW 240
  241 GMNVYEANKF PIFSSDLF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [325-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DKQGQLYNIS TIVNNKFELD MENYQQQGRV YLSTFFAISY GIGFAAIVST LTHVALFNG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [384-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KGIWQQVRAS TKAKMDIHTR LMKKYKDIPG WWFYSLLAIS LVLSLVLCIF MKDEIQMPWW  60
   61 GLLLASFMAL TFTVPVSIIT ATTNQTPGLN IITEYLMGVL LPGRPIANVC FKTYGYISMS 120
  121 QAISFLNDFK LGHYMKIPPR SMFLVQFIGT VIAGTVNISV AWYLLT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [550-734]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVENICQKEL LPPNSPWTCP SDRVFFDASV IWGLVGPKRI FGRLGNYPAL NWFFLGGLIG  60
   61 PVLVWLLQKA FPTKTWISQI NLPVLLGATA AMPPATSVNF NCWIIVGVIF NYFVFKYCKK 120
  121 WWQRYNYVLS AALDAGLAFM GVLLYFSLTM NGISINHWWG AKGENCPLAS CPTAPGVLVD 180
  181 GCPVF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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