YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18391073, gi\|...
Organism:	Arabidopsis thaliana
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18391073, gi|....

Description	E-value	Query Range	Subject Range
gi\|21594051 - gi\|21594051\|gb\|AAM65969.1\| unknown [Arabidopsis thaliana]	209.0	[0..1]	[124..1]
gi\|61557254, gi\|... - gi\|61557254\|ref\|NP_001013213.1\| DNA-directed DNA polymerase delta 4 [Rattus norvegicus], gi\|38303877...	131.0	[0..30]	[120..10]
DPOD4_MOUSE - DNA polymerase delta subunit 4 OS=Mus musculus GN=Pold4 PE=3 SV=1	126.0	[0..30]	[120..10]
gi\|49090034, gi\|... - gi\|67523981\|ref\|XP_660050.1\| hypothetical protein AN2446.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	124.0	[0..14]	[109..86]
DPOD4_BOVIN - DNA polymerase delta subunit 4 OS=Bos taurus GN=POLD4 PE=1 SV=1	122.0	[0..30]	[120..10]
gi\|66361654 - gi\|66361654\|ref\|XP_627350.1\| hypothetical protein [Cryptosporidium parvum Iowa II] gi\|46228730 - gi\|46228730\|gb\|EAK89600.1\| hypothetical protein cgd8_4650 [Cryptosporidium parvum Iowa II]	121.0	[0..14]	[112..7]
gi\|39977693, gi\|... - gi\|39977693\|ref\|XP_370234.1\| hypothetical protein MGG_06731 [Magnaporthe grisea 70-15], gb\|EAA55074....	120.0	[0..23]	[114..75]
gi\|73983609 - gi\|73983609\|ref\|XP_854661.1\| PREDICTED: similar to DNA polymerase delta subunit 4 (DNA polymerase de...	119.0	[0..30]	[120..10]
gi\|42551299, gi\|... - gi\|46123309\|ref\|XP_386208.1\| hypothetical protein FG06032.1 [Gibberella zeae PH-1], gi\|42551299\|gb\|E...	119.0	[0..25]	[116..80]
gi\|67588370 - gi\|67588370\|ref\|XP_665348.1\| hypothetical protein [Cryptosporidium hominis TU502] gi\|54655993 - gi\|54655993\|gb\|EAL35118.1\| hypothetical protein Chro.80536 [Cryptosporidium hominis]	116.0	[0..14]	[112..7]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTAKNLKG FYKQTKSNIT GGISKSKPSS RKVAPKHAAA QGSDVTQPAA LISHGSVDLN  60
   61 EDYDKEEEML RQFDMNITYG PCLGMTRLDR WERAVRLGMN PPNEIEKLLK TGKVQQDCLW 120
  121 QGRV

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	6.920819
Match:	PF04081.4
Description:	No description for PF04081.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits