YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|18405537
Organism: Arabidopsis thaliana
Length: 414 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18405537.

Description E-value Query
Range
Subject
Range
gi|8778331 - gi|8778331|gb|AAF79340.1|AC002304_33 F14J16.3 [Arabidopsis thaliana]
538.0 [0..1] [414..522]

Back

Predicted Domain #1
Region A:
Residues: [1-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMRELSQLN RDSDGDEEVW VKHYSSNHQI LLVGEGDFSF SHSLATLFGS ASNICASSLD  60
   61 SYDVVVRKYK KARSNLKTLK RLGALLLHGV DATTLHFHPD LRYRRFDRVI FNFPHAGFHG 120
  121 RESDSSLIRK HRELVFGFFN GASRLLRANG EVHVSHKNKA PFSEWNLEEL ASRCFLVLIQ 180
  181 RVAFEKNNYP GYENKRGDGR RCDQPFLLG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [210-414]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ECSTFKFRFS RVAKELYAEK VRSREVKERE SMYPEAILNK QPVSFDHRYR LQTEFEAIAG  60
   61 TITLGKSKIL WLSQEKGHLH WIFVTTKNVD VYSSKIPVFL ICTLESRQRD IACFVKTFQF 120
  121 KLVKNHYPNT LTAGVEFLVK FITGKYEECQ QVTYLRKNFS GYGDGNKEII IFVAVLLEDH 180
  181 FSVNDSLEDI TWTRGLDNLQ ISVCF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle