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View Structure Prediction Details

Protein: gi|22330245, gi|...
Organism: Arabidopsis thaliana
Length: 447 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22330245, gi|....

Description E-value Query
Range
Subject
Range
gi|79319928 - gi|79319928|ref|NP_001031188.1| TAF6B4 (TBP-ASSOCIATED FACTOR 6B4); DNA binding / RNA polymerase II ...
658.0 [0..11] [447..90]

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Predicted Domain #1
Region A:
Residues: [1-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMSILLFISG IWSLPLAPKV CGSRELLRTE IYTSSMTKMS SSRMLSKLLY QMHLLMHLFS  60
   61 HWLAIDGIQP SIPQNSPLQA ISDLKRSEYK DDGLAARQVL SKDLQIYFDK VTEWALTQSG 120
  121 STLFRQALAS LEIDPGLHPL VPFFTSFIAE EIVKNMDNYP ILLALMRLAR SLLHNPHVHI 180
  181 EPYLHQLMPS IITCLIAKRL GRRSSDNHWD LRNFTASTVA STCKRFGHVY HNLLPRVTRS 240
  241 LLHTFLDPTK ALPQHYGAIQ GMVALGLNMV RFLVLPNLGP YLLLLLPEMG LEKQKEEAKR 300
  301 HGAWLVYGAL MVAAGRCLYE RLKTSETLLS PPTSSVWKTN GKLTSP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.07
Match: 2ie3A
Description: No description for 2ie3A was found.

Predicted functions:

Term Confidence Notes
binding 0.267627928716605 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [347-447]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RQSKRKASSD NLTHQPPLKK IAVGGIIQMS STQMQMRGTT TVPQQSHTDA DARHHNSPST  60
   61 IAPKTSAAAG TDVDNYLFPL FEYFGESMLM FTPTHELSFF L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle