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View Structure Prediction Details

Protein: gi|15220327, gi|...
Organism: Arabidopsis thaliana
Length: 256 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15220327, gi|....

Description E-value Query
Range
Subject
Range
gi|12642614 - gi|12642614|gb|AAK00311.1|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...
221.0 [0..2] [236..1482]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPSFVLLSI VLLLSSSLSD AADFGSPSQP PSMAPTPQPS NSTDCSSVIY SMVDCLSFLT  60
   61 VGSTDPSPTK TCCVGVKTVL NYSPKCLCSA LESSREMGFV LDDTKALAMP KICNVPIDPN 120
  121 CDVSTPAAST PVSPPVESPT TSPSSAKSPA ITPSSPAVSH SP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.13
Match: 1be2A
Description: LIPID TRANSFER PROTEIN COMPLEXED WITH PALMITATE, NMR, 10 STRUCTURES
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [163-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPVRHSSPPV SHSSPPVSHS SPPTSRSSPA VSHSSPVVAA SSPVKAVSSS TASSPRAASP  60
   61 SPSPSPSISS SGILLVSKLF IAVVMVSSFL YILA

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.958
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

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