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View Structure Prediction Details

Protein: CHX5_ARATH
Organism: Arabidopsis thaliana
Length: 815 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for CHX5_ARATH.

Predicted Domain #1
Region A:
Residues: [1-92]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESRNEAYEG AYNATFWGDF SYHGYGFSED GSKFCEQIPI LVNSFGVWEK LDLPIRGMKI  60
   61 WDYSLPHLES VIVLVLCLWQ FFYLSLKKIG LP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [93-520]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPKITSMMIA GAALSQTNLL PNDWTIQHIL FPDDTRPKVP ETLGGFAFVF YWFIEGVKMD  60
   61 VGMVRKTGTK VIVTGIATVI LPIIAANMVF GKLRETGGKY LTGMEYRTIL FMQSISAFTG 120
  121 ISRLLRDLRI NHSEFGRIVI STAMVADGTG FGVNLFALVA WMDWRVSALQ GVGIIGYVIF 180
  181 MVWVVRPAMF WVIKRTPQER PVKECFIYII LILAFGGYYF LKEIHMFPAV GPFLLGLCVP 240
  241 HGPPLGSQLV EKFESFNTGI LLPLFLFFSM LQIDGPWLAN QIGQLRHFDG QLYEALTIII 300
  301 VVFVAKIIFS MIPALLAKMP LTDSFVMALI LSNKGIVELC YFLYGVESNV LHVKSFTIMA 360
  361 TMILVSSTIS PVLIHYLYDS SKRFISFQKR NLMSLKLGSE LKFLVCIHKA DHISGMINLL 420
  421 AQSFPLHE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 26.30103
Match: 1zcdA
Description: Crystal structure of the Na+/H+ antiporter NhaA
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [521-815]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STISCYVIHL VELVGLDNPV FISHQMQKAE PGNRSYSNNV LIAFDNFKHY WKSISLELFT  60
   61 CISNPRYMHQ EIYSLALDKQ ASFLMLPFHI IWSLDQTTVV SDDVMRRNAN LNVLRQAPCS 120
  121 VGIFVHRQKL LSAQKSSPSF EVCAIFVGGK DDREALALGR QMMRNPNVNL TVLKLIPAKM 180
  181 DGMTTGWDQM LDSAEVKEVL RNNNNTVGQH SFVEYVEETV NDGSDTSTLL LSIANSFDLF 240
  241 VVGRSAGVGT DVVSALSEWT EFDELGVIGD LLVSQDFPRR GSVLVVQQQQ NVACR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.69897
Match: 2jaxA
Description: No description for 2jaxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle