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View Structure Prediction Details

Protein: GDL8_ARATH
Organism: Arabidopsis thaliana
Length: 403 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDL8_ARATH.

Description E-value Query
Range
Subject
Range
gi|10764858 - gi|10764858|gb|AAF24548.2|AC007508_11 F1K23.17 [Arabidopsis thaliana]
437.0 [0..1] [403..421]

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Predicted Domain #1
Region A:
Residues: [1-403]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASLDSLPAM KLVRFILSTL LVTSVNSQTQ CRNFKSIISF GDSIADTGNL LGLSDPNDLP  60
   61 ASAFPPYGET FFHHPTGRYS DGRLIIDFIA EFLGFPLVPP FYGCQNANFK KGVNFAVAGA 120
  121 TALEPSFLEE RGIHSTITNV SLSVQLRSFT ESLPNLCGSP SDCRDMIENA LILMGEIGGN 180
  181 DYNFALFQRK PVKEVEELVP FVIATISSAI TELVCMGGRT FLVPGNFPIG YSASYLTLYK 240
  241 TSNKEEYDPL TGCLKWLNDF SEYYNKQLQE ELNGLRKLYP HVNIIYADYY NALLRLFQEP 300
  301 AKFGFMNRPL PACCGVGGSY NFNFSRRCGS VGVEYCDDPS QYVNYDGIHM TEAAYRLISE 360
  361 GLLKGPYAIP PFKWSCLSSE IMNKMSLDTQ ILDEQLLQGC LKV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.13
Match: 1escA
Description: THE MOLECULAR MECHANISM OF ENANTIORECOGNITION BY ESTERASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.471286748048633 bayes_pls_golite062009
catalytic activity 0.319044203629006 bayes_pls_golite062009
protein binding 0.0277911089352154 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle