YRC Public Data Repository - Protein Structure Prediction

Protein:	DRM1_ARATH
Organism:	Arabidopsis thaliana
Length:	132 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DRM1_ARATH.

Description	E-value	Query Range	Subject Range
gi\|14335096, gi\|... - gi\|9795604\|gb\|AAF98422.1\|AC021044_1 dormancy-associated protein [Arabidopsis thaliana], gi\|2995992\|g...	197.0	[0..1]	[121..1]
gi\|45738252 - gi\|45738252\|gb\|AAS75891.1\| auxin-repressed protein [Solanum virginianum] gi\|45738252 - gi\|45738252\|gb\|AAS75891.1\| auxin-repressed protein [Solanum virginianum]	177.0	[0..1]	[121..1]
gi\|45758711 - gi\|45758711\|gb\|AAS76635.1\| auxin-repressed protein [Nicotiana tabacum]	176.0	[0..1]	[121..1]
gi\|58700653 - gi\|58700653\|gb\|AAC62104.2\| auxin-repressed protein [Elaeagnus umbellata]	175.0	[0..1]	[121..1]
gi\|13430203 - gi\|13430203\|gb\|AAK25768.1\|AF336307_1 auxin-repressed protein like-protein [Malus x domestica]	174.0	[0..1]	[121..1]
gi\|18266047 - gi\|18266047\|gb\|AAL67436.1\|AF458410_1 auxin-repressed protein [Brassica oleracea]	172.0	[0..7]	[121..1]
gi\|28207599 - gi\|28207599\|gb\|AAO32054.1\| auxin-repressed protein [Brassica rapa subsp. pekinensis]	170.0	[0..9]	[121..1]
gi\|111183163 - gi\|111183163\|gb\|ABH07900.1\| auxin repressed/dormancy associated protein [Lycopersicon esculentum]	169.0	[0..1]	[125..1]

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Predicted Domain #1

Region A:
Residues: [1-132]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVLLEKLWDD VVAGPQPDRG LGRLRKITTQ PINIRDIGEG SSSKVVMHRS LTMPAAVSPG  60
   61 TPTTPTTPTT PRKDNVWRSV FNPGSNLATR AIGSNIFDKP THPNSPSVYD CVDNEAQRKE 120
  121 HVALCLVGAW IK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	59.229148
Match:	PF05564.3
Description:	No description for PF05564.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits