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View Structure Prediction Details

Protein: B3GTH_ARATH
Organism: Arabidopsis thaliana
Length: 673 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for B3GTH_ARATH.

Description E-value Query
Range
Subject
Range
gi|26451550 - gi|26451550|dbj|BAC42872.1| unknown protein [Arabidopsis thaliana]
602.0 [0..1] [673..1]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSKLDNSS SQIRFGLVQF LLVVLLFYFL CMSFEIPFIF RTGSGSGSDD VSSSSFADAL  60
   61 PRPMVVGGGS REANWVVGEE EEADPHRHFK DPGRVQLRLP ERKMREFKSV SEIFVNESFF 120
  121 DNGGFSDEFS IFHKTAKHAI SMGRKMWDGL DSGLIKPDKA PVKTRIEKCP DMVSVSESEF 180
  181 VNRSRILVLP CGLTLGSHIT VVATPHWAHV EKDGDKTAMV SQFMMELQGL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [231-399]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAVDGEDPPR ILHFNPRIKG DWSGRPVIEQ NTCYRMQWGS GLRCDGRESS DDEEYVDGEV  60
   61 KCERWKRDDD DGGNNGDDFD ESKKTWWLNR LMGRRKKMIT HDWDYPFAEG KLFVLTLRAG 120
  121 MEGYHISVNG RHITSFPYRT GFVLEDATGL AVKGNIDVHS VYAASLPST

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 29.69897
Match: 2d6kA
Description: No description for 2d6kA was found.

Predicted Domain #3
Region A:
Residues: [400-673]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPSFAPQKHL EMQRIWKAPS LPQKPVELFI GILSAGNHFA ERMAVRKSWM QQKLVRSSKV  60
   61 VARFFVALHA RKEVNVDLKK EAEYFGDIVI VPYMDHYDLV VLKTVAICEY GVNTVAAKYV 120
  121 MKCDDDTFVR VDAVIQEAEK VKGRESLYIG NINFNHKPLR TGKWAVTFEE WPEEYYPPYA 180
  181 NGPGYILSYD VAKFIVDDFE QKRLRLFKME DVSMGMWVEK FNETRPVAVV HSLKFCQFGC 240
  241 IEDYFTAHYQ SPRQMICMWD KLQRLGKPQC CNMR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.39794
Match: 2j0aA
Description: No description for 2j0aA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle