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View Structure Prediction Details

Protein: gi|124300970, gi...
Organism: Arabidopsis thaliana
Length: 265 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124300970, gi....

Description E-value Query
Range
Subject
Range
gi|9280660, gi|2... - gi|9280660|gb|AAF86529.1|AC002560_22 F21B7.23 [Arabidopsis thaliana], pir||B86167 protein F21B7.23 [...
348.0 [0..1] [265..1]
gi|113565036, gi... - gi|50927384|ref|XP_473390.1| OSJNBb0038F03.14 [Oryza sativa (japonica cultivar-group)], emb|CAE02012...
gi|116310243, gi... - gi|218195315|gb|EEC77742.1| hypothetical protein OsI_16858 [Oryza sativa Indica Group], gi|116310243...
342.0 [0..1] [263..1]
gi|73992146, gi|... - gi|73992148|ref|XP_866779.1| PREDICTED: similar to Engulfment and cell motility protein 2 (CED-12 ho...
308.0 [0..9] [249..245]

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Predicted Domain #1
Region A:
Residues: [1-96]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRGKGEKKA TKSRDGSGQV VPLTEPVVTA TGMVGTRSWI GGLFTRSNRR QDKAVDYTLS  60
   61 PLQEERLQRL QDRMVVPFDE TRPDHQESLK ALWNVA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [97-265]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPNVHLTGLV TEQWKEMGWQ GPNPSTDFRG CGFIALENLL FSARTYPVCF RRLLLKQRGD  60
   61 RAKWEYPFAV AGINISFMLI QMLDLQNNPK PKCLPGMNFL KLLEEDERAF DVLYCIAFAM 120
  121 MDAQWLAMHA SYMEFNEVLQ ATRNQLEREL SLDDIHRIQD LPAYNLLFQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 89.958607
Match: PF04727.3
Description: No description for PF04727.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle