YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|88010886, gi|...
Organism: Arabidopsis thaliana
Length: 83 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88010886, gi|....

Description E-value Query
Range
Subject
Range
gi|26451444 - gi|26451444|dbj|BAC42821.1| unknown protein [Arabidopsis thaliana]
160.0 [0..1] [83..1]

Back

Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGGKAKYI IGALIGSFGI SYIFDKVISD NKIFGGTTPG TVSNKEWWAA TDEKFQAWPR  60
   61 TAGPPVVMNP ISRQNFIVKT RPE

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 54.823909
Match: PF06592.4
Description: No description for PF06592.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.557 N/A N/A d.15.7 Immunoglobulin-binding domains
View Download 0.430 N/A N/A b.40.4 Nucleic acid-binding proteins
View Download 0.423 N/A N/A d.47.1 Ribosomal protein L11, N-terminal domain
View Download 0.416 N/A N/A d.230.3 Amyloid beta a4 protein copper binding domain (domain 2)
View Download 0.414 N/A N/A d.58.17 Metal-binding domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle