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View Structure Prediction Details

Protein: ROGF2_ARATH
Organism: Arabidopsis thaliana
Length: 485 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ROGF2_ARATH.

Description E-value Query
Range
Subject
Range
ROGF2_ARATH - Rop guanine nucleotide exchange factor 2 OS=Arabidopsis thaliana GN=ROPGEF2 PE=1 SV=1
815.0 [0..1] [485..1]
gi|125572637, gi... - gi|56784047|dbj|BAD82675.1| hypothetical protein [Oryza sativa Japonica Group], gi|125572637|gb|EAZ1...
691.0 [0..75] [485..34]

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Predicted Domain #1
Region A:
Residues: [1-95]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENLPNHEEN DDVGYHQSPG PIDPNDHSAS ETPVYSTMST DSFAYHRTCS ETSGGGFSDQ  60
   61 IDETSSFCTE ASPSDWPVLT ESNNSASSNF PTVFD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.661 d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.649 d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.543 d.16.1 FAD-linked reductases, C-terminal domain
View Download 0.532 d.129.1 TATA-box binding protein-like
View Download 0.430 d.156.1 S-adenosylmethionine decarboxylase
View Download 0.426 d.87.1 FAD/NAD-linked reductases, dimerisation (C-terminal) domain
View Download 0.406 d.129.1 TATA-box binding protein-like
View Download 0.372 d.101.1 Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5

Predicted Domain #2
Region A:
Residues: [96-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKHNQIETDE HLAVQEISEP ELETMKERFS KLLLGEDMSG SGKGVCTAVT ISNAITNLYA  60
   61 TVFGQNLRLE PLEIEQKTTW KREMNCLLSV CDYIFEFIPK SQNLSNGATV EVMESRPRAD 120
  121 IYINLPALRK LDSMLMEALD SFQKTEFWYA EEGSLSMKST RSATGSFRKV IVQRKEEKWW 180
  181 LPIPLVPLQG LSEKARKQLK SKRESTNQIH KAAMAINSSI LGEMDIPDSY MATLPKSGKA 240
  241 STGDAIYRHM TSSGRFSPEK LLDRLKIVSE HEALQLADRV EASMYTWRRK ACLNNSKSSW 300
  301 NMVKDLMSIT ERSDKNYVLA ERAESLLFCL KQRYPELSQT SLDICKIHCN KDVGKAVLES 360
  361 YSRVLEGLAF NIVAWIDDVL YVDKTMRGEE 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 176.0
Match: 2ntxA
Description: No description for 2ntxA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle