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View Structure Prediction Details

Protein: VTI12_ARATH
Organism: Arabidopsis thaliana
Length: 222 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VTI12_ARATH.

Description E-value Query
Range
Subject
Range
gi|73999473 - gi|73999473|ref|XP_544116.2| PREDICTED: similar to vesicle transport through interaction with t-SNAR...
163.0 [0..2] [222..176]

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Predicted Domain #1
Region A:
Residues: [1-222]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDVFEGYER QYCELSTNLS RKCHSASVLS NGEEKKGKIA EIKSGIDEAD VLIRKMDLEA  60
   61 RSLQPSAKAV CLSKLREYKS DLNQLKKEFK RVSSADAKPS SREELMESGM ADLHAVSADQ 120
  121 RGRLAMSVER LDQSSDRIRE SRRLMLETEE VGISIVQDLS QQRQTLLHAH NKLHGVDDAI 180
  181 DKSKKVLTAM SRRMTRNKWI ITSVIVALVL AIILIISYKL SH

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.39794
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle