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View Structure Prediction Details

Protein: Y1400_ARATH
Organism: Arabidopsis thaliana
Length: 122 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Y1400_ARATH.

Description E-value Query
Range
Subject
Range
gi|5726304 - gi|5726304|gb|AAD48405.1|AF136945_1 major allergen Cor a 1.0401 [Corylus avellana]
137.0 [0..13] [122..45]

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Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLKGALSVK FDVKCPADKF FSAFVEDTNR PFEKNGKTEI EAVDLVKKTM TIQMSGSEIQ  60
   61 KYFKTLKGSI AVTPIGVGDG SHVVWTFHFE KVHKDIDDPH SIIDESVKYF KKLDEAILNF 120
  121 KE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.154902
Match: 1vjhA
Description: Gene Product of At1g24000 from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle