| Protein: | gi|15223384 |
| Organism: | Arabidopsis thaliana |
| Length: | 586 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15223384.
| Description | E-value | Query Range |
Subject Range |
|
|
274.0 | [0..1] | [338..1] |
|
Region A: Residues: [1-168] |
1 11 21 31 41 51
| | | | | |
1 MSDSGEPKPS QQEEPLPQPA AQETQSQQVC TFFKKPTKSK NIRKRTIDAD EEDGDSKSES 60
61 SILQNLKKVA KPDSKLYFSS GPSKSSTTTS GAPERSVFHY DSSKEIQVQN DSGATATLET 120
121 ETDFNQDARA IRERVLKKAD EALKGNKKKA SDEKLYKGIH GYTDHKAG
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [169-270] |
1 11 21 31 41 51
| | | | | |
1 FRREQTISSE KAGGSHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFLHDRG 60
61 DYKPGWQIEK EWEEAEKVRK RNKAMGVEDE DDEADKDSDE DE
|
| Detection Method: | |
| Confidence: | 2.83 |
| Match: | 1rgoA |
| Description: | Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [271-336] |
1 11 21 31 41 51
| | | | | |
1 NALPFACFIC REPFVDPVVT KCKHYFCEHC ALKHHTKNKK CFVCNQPTMG IFNAAHEIKK 60
61 RMAEER
|
| Detection Method: | |
| Confidence: | 8.69897 |
| Match: | 2csyA |
| Description: | Solution structure of the RING domain of the Zinc finger protein 183-like 1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [337-515] |
1 11 21 31 41 51
| | | | | |
1 SKAEQGLRRL WPVGEVVPKS KAVTRVWWDI NRCPVPADVD VRRVGPCIKR ALEKLGYSGP 60
61 LTITAVGILT DVPHDFLRQV HSSGIALHHV PTVSETALSG IGWAVVKWTW YNQPPANLML 120
121 ISYEHIYLTT LDMLGRIGYN TVRSILPDDP QQAASSASPS TGSFLWESLL ASLPAADDM
|
| Detection Method: | |
| Confidence: | 2.8 |
| Match: | 2qipA |
| Description: | No description for 2qipA was found. |
|
Region A: Residues: [516-586] |
1 11 21 31 41 51
| | | | | |
1 DSGAPQEDKC GEMGEPALLC EQCRFTVQGF ENFSTHLKSE EHAHESQYYR NEDDETDGDD 60
61 YVRDSEDDEE E
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.441 | a.101.1 | Uteroglobin-like |
| View | Download | 0.438 | a.64.1 | Saposin |
| View | Download | 0.409 | a.101.1 | Uteroglobin-like |
| View | Download | 0.391 | a.4.1 | Homeodomain-like |
| View | Download | 0.315 | a.4.5 | "Winged helix" DNA-binding domain |
