YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: CRTSO_ARATH
Organism: Arabidopsis thaliana
Length: 595 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CRTSO_ARATH.

Description E-value Query
Range
Subject
Range
CRTSO_ARATH - Carotenoid isomerase, chloroplast precursor - Arabidopsis thaliana (Mouse-ear cress)
357.0 [0..1] [579..1]

Back

Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLCFQNPVK CGDRLFSALN TSTYYKLGTS NLGFNGPVLE NRKKKKKLPR MVTVKSVSSS  60
   61 VVASTVQGTK RDGG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.522879
Match: 1ps9A
Description: The Crystal Structure and Reaction Mechanism of E. coli 2,4-Dienoyl CoA Reductase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [75-595]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESLYDAIVIG SGIGGLVAAT QLAVKEARVL VLEKYLIPGG SSGFYERDGY TFDVGSSVMF  60
   61 GFSDKGNLNL ITQALKAVGR KMEVIPDPTT VHFHLPNNLS VRIHREYDDF IAELTSKFPH 120
  121 EKEGILGFYG DCWKIFNSLN SLELKSLEEP IYLFGQFFQK PLECLTLAYY LPQNAGAIAR 180
  181 KYIKDPQLLS FIDAECFIVS TVNALQTPMI NASMVLCDRH YGGINYPVGG VGGIAKSLAE 240
  241 GLVDQGSEIQ YKANVKSIIL DHGKAVGVRL ADGREFFAKT IISNATRWDT FGKLLKGEKL 300
  301 PKEEENFQKV YVKAPSFLSI HMGVKAEVLP PDTDCHHFVL EDDWKNLEEP YGSIFLSIPT 360
  361 ILDSSLAPDG RHILHIFTTS SIEDWEGLPP KEYEAKKEDV AARIIQRLEK KLFPGLSSSI 420
  421 TFKEVGTPRT HRRFLARDKG TYGPMPRGTP KGLLGMPFNT TAIDGLYCVG DSCFPGQGVI 480
  481 AVAFSGVMCA HRVAADIGLE KKSRVLDVGL LGLLGWLRTL A

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.09691
Match: 2bxrA
Description: Human Monoamine Oxidase A in complex with Clorgyline, Crystal Forma A
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle