YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|42571459
Organism: Arabidopsis thaliana
Length: 162 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42571459.

Description E-value Query
Range
Subject
Range
PNSL2_ARATH - Photosynthetic NDH subunit of lumenal location 2, chloroplastic OS=Arabidopsis thaliana GN=PNSL2 PE=...
253.0 [0..1] [159..1]

Back

Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFTTTNTP PPYLLRKIYH RRVNQPFSVV CCTGEPQQDI FTRRRTLTSL ITFTVIGGAT  60
   61 SSALAQEKWG TRSFIKEKYF MPGLSPEDAA ARIKQTAEGL RDMREMLDHM SWRYVIFYIR 120
  121 LKQAYLSQDL TNAMNILPES RRNDYVQAAN ELVENMSEVY VI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 34.69897
Match: 1nzeA
Description: Crystal structure of PsbQ polypeptide of photosystem II from higher plants
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle