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View Structure Prediction Details

Protein: CCA22_ARATH
Organism: Arabidopsis thaliana
Length: 436 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CCA22_ARATH.

Description E-value Query
Range
Subject
Range
gi|784946 - gi|784946|emb|CAA83277.1| cyclin 3b [Arabidopsis thaliana]
366.0 [0..1] [436..1]

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Predicted Domain #1
Region A:
Residues: [1-164]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYCSSSMHPN ANKENISTSD VQESFVRITR SRAKKAMGRG VSIPPTKPSF KQQKRRAVLK  60
   61 DVSNTSADII YSELRKGGNI KANRKCLKEP KKAAKEGANS AMDILVDMHT EKSKLAEDLS 120
  121 KIRMAEAQDV SLSNFKDEEI TEQQEDGSGV MELLQVVDID SNVE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [165-436]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPQCCSLYAA DIYDNIHVAE LQQRPLANYM ELVQRDIDPD MRKILIDWLV EVSDDYKLVP  60
   61 DTLYLTVNLI DRFLSNSYIE RQRLQLLGVS CMLIASKYEE LSAPGVEEFC FITANTYTRP 120
  121 EVLSMEIQIL NFVHFRLSVP TTKTFLRRFI KAAQASYKVP FIELEYLANY LAELTLVEYS 180
  181 FLRFLPSLIA ASAVFLARWT LDQTDHPWNP TLQHYTRYEV AELKNTVLAM EDLQLNTSGC 240
  241 TLAATREKYN QPKFKSVAKL TSPKRVTSLF SR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.69897
Match: 2jgzB
Description: No description for 2jgzB was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle