YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|22328084, gi\|...
Organism:	Arabidopsis thaliana
Length:	670 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|22328084, gi|....

Description	E-value	Query Range	Subject Range
gi\|115451989, gi... - gi\|215734813\|dbj\|BAG95535.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115451989\|ref...	936.0	[0..18]	[670..2]
gi\|13785471 - gi\|13785471\|dbj\|BAB43909.1\| phosphoenolpyruvate carboxykinase [Flaveria pringlei]	927.0	[0..1]	[670..1]
gi\|13785469 - gi\|13785469\|dbj\|BAB43908.1\| phosphoenolpyruvate carboxykinase [Flaveria trinervia]	921.0	[0..1]	[670..1]
PCKA_ARATH - Phosphoenolpyruvate carboxykinase [ATP] OS=Arabidopsis thaliana GN=PCKA PE=1 SV=1	900.0	[0..2]	[670..3]
gi\|16950587 - gi\|16950587\|gb\|AAG01894.2\| phosphoenolpyruvate carboxykinase [Lycopersicon esculentum]	899.0	[0..1]	[670..1]
gi\|58036453 - gi\|58036453\|dbj\|BAD88616.1\| phosphoenolpyruvate carboxykinase [Zoysia japonica]	889.0	[0..19]	[670..2]
gi\|33329363 - gi\|33329363\|gb\|AAQ10076.1\| phosphoenolpyruvate carboxykinase [Panicum maximum]	883.0	[0..19]	[670..2]
PCKA_MAIZE - Phosphoenolpyruvate carboxykinase [ATP] OS=Zea mays PE=2 SV=1	882.0	[0..19]	[670..2]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNGNESTG GDFSFSAAAA RDALPRITTE KGGKSPGPAD VCQDDIAPRV NFQTIDELHS  60
   61 LQKKRSAPTT PLRDGSASGV SGTSGPTTPV SSETMLQSVS ASLASLTRET GPKLIRGDPT 120
  121 SAAKVAHVPV TPT

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-670]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLPAADVSDS GLKFTHILHN LSPAELYEQA IKFEKGSFVT STGALATLSG AKTGRSPKDK  60
   61 RVVKDDTTEA ELWWGKGSPN IEMDEKTFLV NRERAVDYLN SLDKVFVNDQ YLNWDPENKI 120
  121 KVRIVSARAY HSLFMHNMCI RPTPEELENF GTPDFTIYNA GKFPCNRFTH YMTSSTSVDI 180
  181 NLGRREMVIL GTQYAGEMKK GLFGVMHYLM PKRKILSLHS GCNMGKDGDV ALFFGLSGTG 240
  241 KTTLSTDHNR YLIGDDEHCW SEAGVSNIEG GCYAKCIDLA RDKEPDIWNA IKFGTVLENV 300
  301 VFDEHTREVD YTDKSVTENT RAAYPIEYIP NSKIPCVGPH PKNVILLACD AFGVLPPISK 360
  361 LNLAQTMYHF ISGYTALVAG TEEGVKEPRA TFSACFGAAF IMLHPTKYAA MLAEKMQAQG 420
  421 ATGWLVNTGW SGGSYGTGSR IKLAYTRKII DAIHSGSLLN ASYRKTDIFG LEIPNEVEGV 480
  481 PSEILEPINA WPDKMAYEDT LLKLAGLFKS NFETFTSHKI GDDGKLTEEI LAAGPNF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1ii2A
Description:	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-liase)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits