| Protein: | PUB41_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 559 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUB41_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
234.0 | [0..208] | [556..98] |
|
Region A: Residues: [1-145] |
1 11 21 31 41 51
| | | | | |
1 MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS 60
61 VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR QKVDHPRPPD AAYVEGVVRA 120
121 RMDKDPNPSP GQSPGPGDKD PEPEI
|
| Detection Method: |  |
| Confidence: | 8.0 |
| Match: | 1rmdA |
| Description: | RAG1 DIMERIZATION DOMAIN |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [146-559] |
1 11 21 31 41 51
| | | | | |
1 LPPVEENSPS DYDAVMEAIR ARSKNSMSPT TSLESVTIGQ SSYHPVRAVS MFSSSTTSSS 60
61 SGVFAGADSP FRNAMSFSST DHSSSPMSPE EEEIFNKLRG TDIFDHEQGL ILLRKMTRSS 120
121 EDLRVSLCTD RILSFLRSLL VSRYNLVQTN AAASVVNLSL EKQNKVKIVR SGFVPLLIDV 180
181 LKSGTTEAQE HVAGALFSLA LEDENKMVIG VLGAVEPLLH ALRSSESERA RQDAALALYH 240
241 LSLIPSNRTR LVRAGAVPTL LSMVRSGDST SRILLVLCNL AACPDGKGAM LDGNAVAILV 300
301 GKLREVGGGD SEAARENCVA VLLTLCQGNL RFRGLASEAG AEEVLMEVEE NGNERVKEKA 360
361 SKILLAMRGG GGGESEFGEN AEAREWNRML EATGLSRTQF QGGQNGGFAY SSQF
|
| Detection Method: | |
| Confidence: | 58.30103 |
| Match: | 1wa5B |
| Description: | Crystal structure of the exportin Cse1p complexed with its cargo ( Kap60p) and RanGTP |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.373576425899935 | bayes_pls_golite062009 |
