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View Structure Prediction Details

Protein: gi|30697674
Organism: Arabidopsis thaliana
Length: 237 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30697674.

Description E-value Query
Range
Subject
Range
CDF1_ARATH - Cyclic dof factor 1 OS=Arabidopsis thaliana GN=CDF1 PE=1 SV=2
373.0 [0..1] [237..62]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METKFCYYNN YNVNQPRHFC KACQRYWTSG GTMRSVPIGA GRRKNKNNSP TSHYHHVTIS  60
   61 ETNGPVLSFS LGDDQKVSSN RFGNQKLVAR IENNDERSNN N

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.522 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.501 N/A N/A c.30.1 PreATP-grasp domain
View Download 0.494 N/A N/A c.78.2 Aspartate/glutamate racemase
View Download 0.460 N/A N/A d.15.2 CAD & PB1 domains
View Download 0.436 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain

Predicted Domain #2
Region A:
Residues: [102-237]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSNGLNCFPG VSWPYTWNPA FYPVYPYWSM PVLSSPVSSS PTSTLGKHSR DEDETVKQKQ  60
   61 RNGSVLVPKT LRIDDPNEAA KSSIWTTLGI KNEVMFNGFG SKKEVKLSNK EETETSLVLC 120
  121 ANPAALSRSI NFHEQM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.263 N/A N/A a.24.10 Histidine-containing phosphotransfer domain, HPT domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle